Indra van Zundert


From Design to Action: DNA Nanostructures in siRNA Delivery
Started on September, 2024

email Indra van Zundert

The versatile properties of DNA nanostructures have garnered attention in the field of nanotechnology, presenting opportunities for designing nanoscale architectures that hold great promise in biological applications. Here, we aim to explore the potential of DNA nanostructures in siRNA delivery for anticancer treatment. While siRNA holds promise for selectively silencing oncogenes, its clinical translation faces obstacles. Naked siRNAs are vulnerable to nucleases, prone to immunotoxicity, and swiftly cleared, hampering them to reach specific target cells. Common delivery systems like viral vectors pose limitations due to immunogenicity and complex production, while lipid or polymeric nanoparticles lack diverse clinical translation. In this project, I will optimize siRNA-DNA nanocomplexes by systematically tailoring parameters like size, shape, charge, and surface modifications. This customization aims to enhance stability, cellular uptake, and selective siRNA release. Unique DNA-labelling strategies will be used to follow the fate of the nanostructures within biological samples. Our evaluation will encompass simple 2D cell monolayers and advanced 3D cancer model systems, ranging from spheroids to patient-derived organoids. The outcomes of this project are expected to provide crucial insights into the biological fate of siRNA-DNA nanocomplexes and establish a foundation for their clinical application in gene therapy.

Publications

Nanoblades allow high-level genome editing in murine and human organoids
Victor Tiroille, Adrien Krug, Emma Bokobza, Michel Kahi, Mattijs Bulcaen, Marjolein M Ensinck, Maarten H Geurts, Delilah Hendriks, François Vermeulen, Frédéric Larbret, Alejandra Gutierrez-Guerrero, Yu Chen, Indra Van Zundert, Susana Rocha, Anne C Rios, Louise Medaer, Rik Gijsbers, Philippe E Mangeot, Hans Clevers, Marianne S Carlon, Frédéric Bost, Els Verhoeyen
Published in Molecular Therapy-Nucleic Acids, June 2023 (see publication in Journal )

Patient-derived organoids from endometrial disease capture clinical heterogeneity and are amenable to drug screening
Matteo Boretto, Nina Maenhoudt, Xinlong Luo, Aurélie Hennes, Bram Boeckx, Bich Bui, Ruben Heremans, Lisa Perneel, Hiroto Kobayashi, Indra Van Zundert, Hilde Brems, Benoit Cox, Marc Ferrante, Hiroshi Uji-I, Kian Peng Koh, Thomas D’Hooghe, Arne Vanhie, Ignace Vergote, Christel Meuleman, Carla Tomassetti, Diether Lambrechts, Joris Vriens, Dirk Timmerman, Hugo Vankelecom
Published in Nature Cell Biology, August 2019 (see publication in Journal )